Decoding molecular programs in melanoma brain metastases
University of Veterinary Medicine, Vienna
Elisa Schumann
Julia Onken
Randi Koll
Güliz Acker
Bohdan Bodnar
Carolin Senger
Sascha Tierling
Peter Vajkoczy
University of Veterinary Medicine, Vienna
University of Veterinary Medicine, Vienna
Petra Kodajova University of Veterinary Medicine, Vienna
Dana Westphal
Friedegund Meier
University of Veterinary Medicine, Vienna
University of Veterinary Medicine, Vienna
Karsten Jürchott
University of Veterinary Medicine, Vienna
Springer Nature
Melanoma brain metastases (MBM) variably respond to therapeutic interventions; thus determining patient's prognosis. However, the mechanisms that govern therapy response are poorly understood. Here, we use a multi-OMICS approach and targeted sequencing (TargetSeq) to unravel the programs that potentially control the development of progressive intracranial disease. Molecularly, the expression of E-cadherin (Ecad) or NGFR, the BRAF mutation state and level of immune cell infiltration subdivides tumors into proliferative/pigmented and invasive/stem-like/therapy-resistant irrespective of the intracranial location. The analysis of MAPK inhibitor-naive and refractory MBM reveals switching from Ecad-associated into NGFR-associated programs during progression. NGFR-associated programs control cell migration and proliferation via downstream transcription factors such as SOX4. Moreover, global methylome profiling uncovers 46 differentially methylated regions that discriminate BRAFmut and wildtype MBM. In summary, we propose that the expression of Ecad and NGFR sub- classifies MBM and suggest that the Ecad-to-NGFR phenotype switch is a rate-limiting process which potentially indicates drug-response and intracranial progression states in melanoma patients.
Englisch
2022
Dieses Werk bzw. dieser Inhalt steht unter einer
CC BY 4.0 - Creative Commons Namensnennung 4.0 International Lizenz.
CC BY 4.0 International
http://creativecommons.org/licenses/by/4.0/