Title (en)
A genome-wide association study of morphometric traits in dromedaries
Language
English
Description (en)
Investigating genomic regions associated with morphometric traits in camels is valuable, because it allows a better understanding of adaptive and productive features to implement a sustainable management and a customised breeding program for dromedaries.With a genome-wide association study (GWAS) including 96 Iranian dromedaries phenotyped for 12 morphometric traits and genotyped-by-sequencing (GBS) with 14,522 SNPs, we aimed at identifying associated candidate genes.The association between SNPs and morphometric traits was investigated using a linear mixed model with principal component analysis (PCA) and kinship matrix.With this approach, we detected 59 SNPs located in 37 candidate genes potentially associated to morphometric traits in dromedaries. The top associated SNPs were related to pin width, whither to pin length, height at whither, muzzle girth, and tail length. Interestingly, the results highlight the association between whither height, muzzle circumference, tail length, whither to pin length. The identified candidate genes were associated with growth, body size, and immune system in other species.We identified three key hub genes in the gene network analysis including ACTB, SOCS1 and ARFGEF1. In the central position of gene network, ACTB was detected as the most important gene related to muscle function. With this initial GWAS using GBS on dromedary camels for morphometric traits, we show that this SNP panel can be effective for genetic evaluation of growth in dromedaries. However, we suggest a higher-density SNP array may greatly improve the reliability of the results.
Keywords (en)
Animals; Genome-Wide Association Studyveterinary; Camelus; Iran; Reproducibility of Results; Phenotype; Polymorphism, Single Nucleotide
DOI
10.1002/vms3.1151
Author of the digital object
Morteza Bitaraf Sani  (Agricultural Research, Education & Extension Organization)
Ali Shafei Naderi  (Agricultural Research, Education & Extension Organization)
Ali Kazemi  (Animal Breeding Center of Iran)
Javad Zareh Harofteh  (Agricultural Research, Education & Extension Organization)
Nader Asadzadeh  (Agricultural Research, Education and Extension Organization)
Mokhtar Mohajer  (Agricultural Research, Education and Extension Organization)
Zahra Roudbari  (University of Jiroft)
Arash Javanmard  (University of Tabriz)
Pamela Anna Burger  (University of Veterinary Medicine Vienna)
Omid Karimi  (Agricultural Research, Education and Extension Organization)
Format
application/pdf
Size
915.5 kB
Licence Selected
Type of publication
Article
Name of Publication (en)
Veterinary Medicine and Science
Pages or Volume
10
Volume
9
Number
4
From Page
1781
To Page
1790
Publisher
Wiley
Publication Date
2023