Histological classification of canine and feline lymphoma using a modular approach based on deep learning and advanced image processing

Title (en)
Histological classification of canine and feline lymphoma using a modular approach based on deep learning and advanced image processing
Language
English
Description (en)
Histopathological examination of tissue samples is essential for identifying tumor malignancy and the diagnosis of different types of tumor. In the case of lymphoma classification, nuclear size of the neoplastic lymphocytes is one of the key features to differentiate the different subtypes. Based on the combination of artificial intelligence and advanced image processing, we provide a workflow for the classification of lymphoma with regards to their nuclear size (small, intermediate, and large). As the baseline for our workflow testing, we use a Unet++ model trained on histological images of canine lymphoma with individually labeled nuclei. As an alternative to the Unet++, we also used a publicly available pre-trained and unmodified instance segmentation model called Stardist to demonstrate that our modular classification workflow can be combined with different types of segmentation models if they can provide proper nuclei segmentation. Subsequent to nuclear segmentation, we optimize algorithmic parameters for accurate classification of nuclear size using a newly derived reference size and final image classification based on a pathologists-derived ground truth. Our image classification module achieves a classification accuracy of up to 92% on canine lymphoma data. Compared to the accuracy ranging from 66.67 to 84% achieved using measurements provided by three individual pathologists, our algorithm provides a higher accuracy level and reproducible results. Our workflow also demonstrates a high transferability to feline lymphoma, as shown by its accuracy of up to 84.21%, even though our workflow was not optimized for feline lymphoma images. By determining the nuclear size distribution in tumor areas, our workflow can assist pathologists in subtyping lymphoma based on the nuclei size and potentially improve reproducibility. Our proposed approach is modular and comprehensible, thus allowing adaptation for specific tasks and increasing the users' trust in computer-assisted image classification.
DOI
10.1038/s41598-023-46607-w
Author of the digital object
Andreas Haghofer  (University of Applied Sciences Upper Austria / Johannes Kepler University)
Christof A. Bertram  (University of Veterinary Medicine Vienna)
Stephan M. Winkler  (University of Applied Sciences Upper Austria / Johannes Kepler University)
Herbert Weissenböck  (University of Veterinary Medicine Vienna)
Josef Scharinger  (Johannes Kepler University)
Marc Aubreville  (Technische Hochschule Ingolstadt)
Robert Klopfleisch  (Freie Univerisität Berlin)
Andrea Fuchs-Baumgartinger  (University of Veterinary Medicine Vienna)
Karoline Lipnik  (University of Veterinary Medicine Vienna)
Licence Selected
Type of publication
Article
Name of Publication (en)
Scientific Reports
Pages or Volume
15
Volume
13
Number
1
Publisher
Nature Portfolio
Publication Date
2023