Title
Gene-Set Enrichment Analysis for Identifying Genes and Biological Activities Associated with Growth Traits in Dromedaries
Language
English
Description (en)
Growth is an important heritable economic trait for dromedaries and necessary for planning a successful breeding program. Until now, genome-wide association studies (GWAS) and QTL-mapping have identified significant single nucleotide polymorphisms (SNPs) associated with growth in domestic animals, but in dromedaries, the number of studies is very low. This project aimed to find biological themes affecting growth in dromedaries. In the first step, 99 candidate SNPs were chosen from a previously established set of SNPs associated with body weight, gain, and birth weight in Iranian dromedaries. Next, 0.5 kb upstream and downstream of each candidate SNP were selected from NCBI (assembly accession: GCA_000803125.3). The annotation of fragments with candidate SNPs regarding the reference genome was retrieved using the Blast2GO tool. Candidate SNPs associated with growth were mapped to 22 genes, and 25 significant biological themes were identified to be related to growth in dromedaries. The main biological functions included calcium ion binding, protein binding, DNA-binding transcription factor activity, protein kinase activity, tropomyosin binding, myosin complex, actin-binding, ATP binding, receptor signaling pathway via JAK-STAT, and cytokine activity. EFCAB5, MTIF2, MYO3A, TBX15, IFNL3, PREX1, and TMOD3 genes are candidates for improving growth in camel breeding programs.
Keywords (en)
Biological theme; Dromedaries; Gene ontology; Growth
DOI
10.3390/ani12020184
Author of the digital object
Morteza Bitaraf  Sani  (Agricultural Research, Education & Extension Organization)
Pamela Anna  Burger  (University of Veterinary Medicine Vienna)
Ali  Shafei Naderi  (Agricultural Research, Education & Extension Organization)
Javad  Zare Harofte  (Agricultural Research, Education & Extension Organization)
Nader  Asadzadeh  (Agricultural Research, Education & Extension Organization)
Saeid  Esmaeilkhanian  (Agricultural Research, Education & Extension Organization)
Mohammad Hossein  Banabazi  (Agricultural Research, Education & Extension Organization / Swedish University of Agricultural Sciences)
Omid  Karimi  (Agricultural Research, Education & Extension Organization)
Zahra  Roudbari  (University of Jiroft)
Format
application/pdf
Size
1.9 MB
Licence Selected
CC BY 4.0 International
Type of publication
Article
Name of Publication (en)
Animals
Pages or Volume
8
Volume
12
Number
2
Publisher
MDPI
Publication Date
2022
Content
Details
Object type
PDFDocument
Format
application/pdf
Created
20.06.2023 08:32:24
This object is in collection
Metadata