<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  
    
  <dc:publisher>BMC</dc:publisher>
    
  
    
  <dc:date>2024</dc:date>
    
  
    
  <dc:relation>isPartOf:https://phaidra.vetmeduni.ac.at/o:605</dc:relation>
    
  
    
  <dc:description xml:lang="eng">We present GenomeDelta, a novel tool for identifying sample-specific sequences, such as recent transposable element (TE) invasions, without requiring a repeat library. GenomeDelta compares high-quality assemblies with short-read data to detect sequences absent from the short reads. It is applicable to both model and non-model organisms and can identify recent TE invasions, spatially heterogeneous sequences, viral insertions, and hotizontal gene transfers. GenomeDelta was validated with simulated and real data and used to discover three recent TE invasions in Drosophila melanogaster and a novel TE with geographic variation in Zymoseptoria tritici.</dc:description>
    
  
    
  <dc:subject xml:lang="eng">DNA Transposable Elements</dc:subject>
    
  <dc:subject xml:lang="eng">Animals</dc:subject>
    
  <dc:subject xml:lang="eng">Drosophila Melanogaster Genetics</dc:subject>
    
  <dc:subject xml:lang="eng">Software</dc:subject>
    
  <dc:subject xml:lang="eng">Ascomycota Genetics</dc:subject>
    
  <dc:subject xml:lang="eng">Gene Library</dc:subject>
    
  
    
  <dc:identifier>doi:10.1186/s13059-024-03459-5</dc:identifier>
    
  <dc:identifier>https://phaidra.vetmeduni.ac.at/o:3842</dc:identifier>
    
  
    
  <dc:type xml:lang="deu">Text</dc:type>
    
  <dc:type xml:lang="deu">Wissenschaftlicher Artikel</dc:type>
    
  
    
  <dc:rights xml:lang="eng">© 2024. The Author(s).</dc:rights>
    
  <dc:rights xml:lang="eng">open access</dc:rights>
    
  
    
  <dc:source xml:lang="eng">Genome Biology</dc:source>
    
  
    
  <dc:title xml:lang="eng">GenomeDelta: detecting recent transposable element invasions without repeat library</dc:title>
    
  
    
  <dc:language>eng</dc:language>
    
  
    
  <dc:format>application/pdf</dc:format>
    
  
    
  <dc:rights>http://creativecommons.org/licenses/by-nc-nd/4.0/</dc:rights>
    
  
    
  <dc:type xml:lang="eng">Text</dc:type>
    
  <dc:type xml:lang="eng">journal article</dc:type>
    
  
    
  <dc:source>issn:1474-760X</dc:source>
    
  
    
  <dc:creator>Riccardo Pianezza</dc:creator>
    
  <dc:creator>Anna Haider</dc:creator>
    
  <dc:creator>Robert Kofler</dc:creator>
    
  
</oai_dc:dc>